Species-specific effects of epigeic earthworms on microbial community structure during first stages of decomposition of organic matter

Background: Epigeic earthworms are key organisms in organic matter decomposition because of the interactions they establish with microorganisms. The earthworm species and the quality and/or substrate availability are expected to be major factors influencing the outcome of these interactions. Here we tested whether and to what extent the epigeic earthworms Eisenia andrei, Eisenia fetida and Perionyx excavatus, widely used in vermicomposting, are capable of altering the microbiological properties of fresh organic matter in the short-term. We also questioned if the earthworm-induced modifications to the microbial communities are dependent on the type of substrate ingested. Methodology/Principal Findings: To address these questions we determined the microbial community structure (phospholipid fatty acid profiles) and microbial activity (basal respiration and microbial growth rates) of three types of animal manure (cow, horse and rabbit) that differed in microbial composition, after being processed by each species of earthworm for one month. No differences were found between earthworm-worked samples with regards to microbial community structure, irrespective of type of manure, which suggests the existence of a bottleneck effect of worm digestion on microbial populations of the original material consumed. Moreover, in mesocosms containing cow manure the presence of E. andrei resulted not only in a decrease in bacterial and fungal biomass, but also in a reduced bacterial growth rate and total microbial activity, while no such reduction was found with E. fetida and P. excavatus. Conclusions/Significance: Our results point to the species of earthworm with its associated gut microbiota as a strong determinant of the process shaping the structure of microbial communities in the short-term. This must nonetheless be weighed against the fact that further knowledge is necessary to evaluate whether the changes in the composition of microbiota in response to the earthworm species is accompanied by a change in the microbial community diversity and/or function.Ministerio de Ciencia e Innovación | Ref. CTM2009-0847

Adaptation of soil microbial communities to temperature: comparison of fungi and bacteria in a laboratory experiment

Temperature not only has direct effects on microbial activity, but can also affect activity indirectly by changing the temperature dependency of the community. This would result in communities performing better over time in response to increased temperatures. We have for the first time studied the effect of soil temperature (5–50 °C) on the community adaptation of both bacterial (leucine incorporation) and fungal growth (acetate‐in‐ergosterol incorporation). Growth at different temperatures was estimated after about a month using a short‐term assay to avoid confounding the effects of temperature on substrate availability. Before the experiment started, fungal and bacterial growth was optimal around 30 °C. Increasing soil temperature above this resulted in an increase in the optimum for bacterial growth, correlated to soil temperature, with parallel shifts in the total response curve. Below the optimum, soil temperature had only minor effects, although lower temperatures selected for communities growing better at the lowest temperature. Fungi were affected in the same way as bacteria, with large shifts in temperature tolerance at soil temperatures above that of optimum for growth. A simplified technique, only comparing growth at two contrasting temperatures, gave similar results as using a complete temperature curve, allowing for large scale measurements also in field situations with small differences in temperature

Recycling and valorization of distilled grape marc through vermicomposting: a pilot-scale study

The present study sought to evaluate the effectiveness of vermicomposting for the valorization of distilled grape marc, one of the main solid by-products of the winery sector during a 56-day pilot-scale trial. The increase in the density and biomass of earthworms ( Eisenia andrei ) during the earlier stages of the process reflected the suitability of the distilled marc ( Vitis vinifera L. cv. Mencía) as feedstock in order to sustain large earthworm populations on a pilot-scale level. Supporting this, from 14 days onwards the pH of Mencía distilled marc fell within weak-alkaline levels and the electrical conductivity was between 0.21 and 0.11 mS cm −2 providing optimum conditions for earthworm growth. A rapid decrease in microbial activity as well as in the content of total polyphenols, both indicative of stabilized materials was also recorded after 14 days of vermicomposting. Moreover, the content of macro- and micronutrients in the end product matched with those considered to have the quality criteria of a good vermicompost with respect to plant health and safe agricultural use. Altogether, it underlines the feasibility of vermicomposting as an environment-friendly approach for the biological stabilization of distilled grape marc fulfilling both environmental protection and fertilizer production.Agencia Estatal de Investigación | Ref. PID2021-124265OB-I00Xunta de Galicia | Ref. ED431C 2022/07Agencia Estatal de Investigación | Ref. RYC-2016-21231Universidade de Vigo/CISU

Changes in chemical and microbiological properties of rabbit manure in a continuous-feeding vermicomposting system

In the present study the potential of the earthworm Eisenia fetida to process large amounts of waste was evaluated through continuous feeding reactors in which new layers of rabbit manure were added sequentially to form an age gradient inside the reactors. An optimal moisture level, ranging from 66% to 76%, was maintained throughout the process using an automatic watering system. The pH was close to 8.3, but decreased to 7.6 after 200 d of vermicomposting. No changes in electrical conductivity through the prole of layers were detected. Based on comparisons of phospholipid fatty acid (PLFA) proles and microbial activity measurements (basal respiration), a decrease in the levels of bacteria and fungi in layers corresponding to vermicomposting times of more than 200 d occurred. This points to a higher degree of stabilisation in the nal product, which is of utmost importance for its safe use as an organic amendment.Ministerio de Ciencia e Innovación | Ref. CTM2009-0847

The evaluation of stability and maturity during the composting of cattle manure

We examined chemical, microbiological and biochemical parameters in order to assess their effectiveness as stability and maturity indicators during the composting process of cattle manure. The composting material obtained after 15 d in trenches and at different times during the maturation phase (i.e. 80, 180 and 270 d) were analyzed. We found that the material collected at the end of the active phase was inadequate to be applied to soil as organic amendment due to its high content of NHþ 4 , its high level of phytotoxicity and the low degree of organic matter stability. After a maturation period of 80 d, the stability of the sample increased. This was shown by a reduction in the dissolved organic carbon (DOC) content and NH+4 concentration and also by a reduction in the microbial activity and biomass; however, 180 d of composting were not sufficient to reduce the phytotoxicity to levels consistent for a safe soil application. Among the various parameters studied, the change in DOC with composting time gave a good indication of stability

Comparison of the effectiveness of composting and vermicomposting for the biological stabilization of cattle manure

Cattle manure is produced in large quantities in industrial breeding facilities and the storage and/or spreading of this waste on land may cause contamination of the atmosphere, soil and water. The aim of the present study was to evaluate the effectiveness of the active phases of composting, vermicomposting, and also a combination of composting and vermicomposting for reducing the polluting potential and for stabilizing cattle manure in the short-term. For this, the degree of decomposition as well as the microbial activity and microbial composition of the resulting products after the active phase of composting and vermicomposting were analysed. None of the treatments significantly reduced the dissolved organic carbon and dissolved organic nitrogen contents relative to the control, and therefore more time may be required for stabilization. Nevertheless, the lowest values of microbial biomass and activity corresponded to the earthworm-worked substrates, in which fungal growth was also promoted; the combined treatment (composting + vermicomposting) was the most effective in terms of stabilizing the cattle manure. Moreover, earthworms promoted the retention of nitrogen and gradual release of P, as well as a reduction in electrical conductivity, thereby producing improved substrates for agricultural use.Xunta de Galicia | Ref. 07MRU023383P

Influence of earthworms on the microbial properties and extracellular enzyme activities during vermicomposting of raw and distilled grape marc

Financiado para publicación en acceso aberto: Universidade de Vigo/CISUGThe treatment of winery wastes by using appropriate management technologies is of utmost need in order to reduce to a minimum their disposal and avoid negative environmental impacts. This is of particular interest for grape marc, the main solid by-product of the winery industry. However, comparative studies on a pilot-scale dealing with the impact of earthworms on marc derived from both red and white grape varieties during vermicomposting are still scarce. The present study sought to evaluate the changes in the biochemical and microbiological properties of red and white raw marc in the presence and the absence of the earthworm species Eisenia andrei. The distilled marc obtained through distillation of the red grape marc was also considered under this scenario. Samples were taken after 14, 28, 42, and 63 days of vermicomposting. On day 14 earthworms led to a pronounced increase in most of the enzymatic activities, but only in those vermireactors fed with raw marc from the red grape variety. Alfa- and beta-glucosidase as well as chitinase and leucine-aminopeptidase activities were between 3 to 5-times higher relative to the control, while alkaline phosphomonoesterase was even up to 14-fold higher with earthworm presence. From day 28 onwards the magnitude of earthworms’ effect on the studied enzymes was also dependent on the type of grape marc. Reduced values of basal respiration, ranging between 200 and 350 mg CO2 kg OM h−1 and indicative of stabilized materials were found in the resulting vermicomposts. Moreover, the content of macro- and micronutrients in the end products matched with those considered to have the quality criteria of a good vermicompost. Altogether, these findings reinforce the effectiveness of vermicomposting for the biological stabilization of grape marc with the dual purpose of fertilizer production and environmental protection.Ministerio de Economía y Competitividad | Ref. AGL2017-86813-RMinisterio de Economía y Competitividad | Ref. RYC-2016-21231Xunta de Galicia | Ref. ED431B 2019/038Xunta de Galicia | Ref. ED431F 2018/0

Epigeic earthworms exert a bottleneck effect on microbial communities through gut associated processes

Background: Earthworms play a critical role in organic matter decomposition because of the interactions they establish with microorganisms. The ingestion, digestion, assimilation of organic material in the gut and then casting is the first step in earthworm-microorganism interactions. The current knowledge of these direct effects is still limited for epigeic earthworm species, mainly those living in man-made environments. Here we tested whether and to what extent the earthworm Eisenia andrei is capable of altering the microbiological properties of fresh organic matter through gut associated processes; and if these direct effects are related to the earthworm diet. Methodology: To address these questions we determined the microbial community structure (phospholipid fatty acid profiles) and microbial activity (fluorescein diacetate hydrolysis) in the earthworm casts derived from three types of animal manure (cow, horse and pig manure), which differed in microbial composition. Principal Findings: The passage of the organic material through the gut of E. andrei reduced the total microbial biomass irrespective of the type of manure, and resulted in a decrease in bacterial biomass in all the manures; whilst leaving the fungi unaffected in the egested materials. However, unlike the microbial biomass, no such reduction was detected in the total microbial activity of cast samples derived from the pig manure. Moreover, no differences were found between cast samples derived from the different types of manure with regards to microbial community structure, which provides strong evidence for a bottleneck effect of worm digestion on microbial populations of the original material consumed. Conclusions/Significance: Our data reveal that earthworm gut is a major shaper of microbial communities, thereby favouring the existence of a reduced but more active microbial population in the egested materials, which is of great importance to understand how biotic interactions within the decomposer food web influence on nutrient cycling.Ministerio de Ciencia e Innovación | Ref. CTM2009-0847